Thursday, April 16, 2009

Group Testing and Compressive Sensing

As Bernard Beauzamy will present a paper at the Aerospace Testing, Design and Manufacturing 2009 Seminar in Munich, I was reminded that he refers to a testing procedure called "group testing" as a solution for companies to comply with the E.U. REACH regulations without incurring major financial losses.

There is a clear connection between group testing and compressive sensing, a subject area for which I perform some type of Technology Watch on a blog: http://nuit-blanche.blogspot.com . More information can be found in either the repository at Rice University or in the Compressive Sensing Big Picture page.

Initially, Group testing was used extensively by the U.S. Army in the 1940's in order to screen for syphilis in their troops. The procedure enabled enormous savings since the detection kits were pricey at the time. One can read the first few paragraphs of this report by Joel Tropp and Anna Gilbert on the connection between compressive sensing and group testing in Signal Recovery From Random Measurements via Orthogonal Matching Pursuit: The Gaussian Case. Also of interest is the video by Anna Gilbert who presented their latest results using this technique (CS + group testing) on bio chips called SNPs (in this experiment they do not use Gaussian matrices but rather sparser constructs called Expander Graphs). I pointed to it before and the video is here. While current results are OK for the time being, it may be difficult for this type of solution to convert the folks in pure bio research unless there is a tremendous savings for the detection of a certain disease. On the other hand, if there is an important financial gain and this testing procedure is Ok'ed by the proper regulation authorities, there is a likely chance that commercial companies could adopt this type of technique faster.

Thursday, July 3, 2008

Welcome to the RMM blog

This blog is aimed at Engineers and Applied Mathematicians interested in developing tools (both algorithms and software) which can handle, at the conceptual level, the three difficulties that are usually met in any real world project :

  • The data are missing or corrupted ;

  • The laws describing the phenomena are not completely known ;

  • The objectives are multiple and contradictory.


  • The RMM program site is hosted at the SCM site. Bernard Beauzamy has devised a list of the different aspects of the on-going program. There are as follows:

  • What is a model ?

  • Mathematical description of the objectives

  • The basic rule of real-life mathematics

  • Can we model everyday life preoccupations ?

  • Probabilistic methods

  • The four steps of an RMM program

  • List of participating people and institutions

  • On going events

  • RMM Library


  • Any new items on these pages will also be featured on this blog.

    How can you find out if there is something new on the blog ? You can either:

  • Come to the site, or

  • Subscribe to this feed (see right column), or

  • you subscribe to the blog by e-mail (on the top right hand side column) and receive new posts/entries directly in your E-mail box.

  • Do you want to contribute ? You can guest blog or send me some information you want to feature. If you want to post an article to the blog and want to post under your name, you will be asked to obtain a Google account. If you do not know or do not want to go through the hassle of going through this process, I can also post the entry directly into the blog with your name.

    On a different note, Wim van Ackooij and myself have created a LinkedIn group devoted to the RMM program. If you are on LinkedIn you may want to join. In order to do so, please go to either Wim or Igor's profile on LinkedIn and click on the RMM group logo to which they are currently affiliated.